Our Services
Medical Information
Helpful Resources
Published on: 8/18/2026
Muscle aches often trace back to impaired ATP production, the cellular energy process that powers every contraction and relaxation of muscle fibers. When mitochondria cannot generate enough ATP, calcium pumps stall, lactate and metabolic byproducts accumulate, and muscles signal pain, heaviness, and slow recovery. Common contributors include mitochondrial dysfunction, thyroid and hormone imbalance, low iron or B12, vitamin D deficiency, viral illness, statin use, and post-exertional crashes seen in ME/CFS and long COVID. Several factors and warning signs can distinguish ordinary soreness from a treatable underlying condition, so see below to understand more.
Because energy-related muscle pain has many overlapping causes, a free, instant, online symptom check can help you organize your symptoms, see which conditions may fit, and decide whether self-care, lab testing, or a doctor visit should be your next step.
Last reviewed for medical accuracy: 08/18/2026
Muscle aches are a common complaint, whether after a tough workout, a long day on your feet, or simply from everyday activities. While soreness can come from tiny tears in muscle fibers, another important contributor is cellular fatigue—when muscles don’t get enough energy. Understanding how impaired ATP production in your cells leads to muscle aches helps you recognize possible underlying issues, including mitochondrial dysfunction in muscle biopsy.
Adenosine triphosphate (ATP) is often called the “energy currency” of your cells. Every muscle contraction, from lifting your coffee mug to running a marathon, depends on ATP.
If this cycle slows down or stalls, your muscles can’t get the energy they need, leading to:
Mitochondria are tiny structures inside cells often called “powerhouses.” They specialize in turning nutrients into ATP through a process known as oxidative phosphorylation.
Healthy mitochondria keep this system running smoothly. When they malfunction, less ATP is made and cellular fatigue sets in.
A muscle biopsy—sampling a tiny piece of muscle tissue—can reveal signs of mitochondrial problems. Pathologists look for:
Finding these markers confirms mitochondrial dysfunction in muscle biopsy. This doesn’t always mean a genetic disorder; dysfunction can also result from:
When energy production falters, several downstream effects contribute to aching muscles:
Lactic Acid Buildup
– Without enough oxygen-driven ATP production, muscles rely on anaerobic glycolysis, producing lactic acid.
– Excess lactic acid can lower pH in muscle tissue, irritating nerve endings.
Reactive Oxygen Species (ROS)
– Faulty mitochondria can leak electrons, generating ROS.
– High ROS levels damage proteins and cell structures, triggering inflammation and pain.
Impaired Calcium Handling
– Calcium ions control muscle contraction and relaxation.
– ATP is needed to pump calcium back into storage; low ATP prolongs muscle tension, causing cramps and aches.
Energy Mismatch
– Energy demand exceeds supply.
– Cells signal distress through inflammatory pathways, attracting immune cells that release pain-mediating chemicals.
If chronic muscle aches don’t improve with rest, your doctor may explore mitochondrial causes:
While some mitochondrial conditions are genetic and require specialist care, you can take steps to support your cellular energy:
Persistent, unexplained muscle aches deserve attention. If you’re concerned about low energy, unusual cramps, or weakness, consider a free, online symptom check, using the doctor approved Ubie Symptom Checker. It’s a quick way to gather insights and decide whether you need medical evaluation.
Always speak to a doctor about any symptoms that could be life threatening or seriously impact your quality of life. Early diagnosis and guidance can make all the difference in managing mitochondrial dysfunction and reducing muscle aches.
(References)
* Layzer RB. Muscle metabolism during fatigue and work. Baillieres Clin Endocrinol Metab. 1990 Sep;4(3):441-59. doi: 10.1016/s0950-351x(05)80064-3. PMID: 2268224.
* Mohaupt MG. [Rhabdomyolysis]. Ther Umsch. 2003 Jul;60(7):391-7. doi: 10.1024/0040-5930.60.7.391. PMID: 12956032.
* Mense S. The pathogenesis of muscle pain. Curr Pain Headache Rep. 2003 Dec;7(6):419-25. doi: 10.1007/s11916-003-0057-6. PMID: 14604500.
* Koo P, Sethi JM. Metabolic Myopathies and the Respiratory System. Clin Chest Med. 2018 Jun;39(2):401-410. doi: 10.1016/j.ccm.2018.02.001. PMID: 29779598.
* Laufs U, Banach M, Mancini GBJ, Gaudet D, Bloedon LT, Sterling LR, Kelly S, Stroes ESG. Efficacy and Safety of Bempedoic Acid in Patients With Hypercholesterolemia and Statin Intolerance. J Am Heart Assoc. 2019 Apr 2;8(7):e011662. doi: 10.1161/JAHA.118.011662. PMID: 30922146; PMCID: PMC6509724.
* Hussain Y, Miller S. Other Myopathies. Neurol Clin. 2020 Aug;38(3):619-635. doi: 10.1016/j.ncl.2020.04.002. PMID: 32703473.
* Dall'Aglio A, Kissling S, Vollenweider P, Jaccard E. [Rhabdomyolysis: early management]. Rev Med Suisse. 2020 Nov 25;16(716):2272-2278. PMID: 33237645.
* Ruscica M, Sirtori CR, Carugo S, Banach M, Corsini A. Bempedoic Acid: for Whom and When. Curr Atheroscler Rep. 2022 Oct;24(10):791-801. doi: 10.1007/s11883-022-01054-2. Epub 2022 Jul 28. PMID: 35900636; PMCID: PMC9474414.
* Gindri IM, Ferrari G, Pinto LPS, Bicca J, Dos Santos IK, Dallacosta D, Roesler CRM. Evaluation of safety and effectiveness of NAD in different clinical conditions: a systematic review. Am J Physiol Endocrinol Metab. 2024 Apr 1;326(4):E417-E427. doi: 10.1152/ajpendo.00242.2023. Epub 2023 Nov 16. PMID: 37971292.
* Huang JXF, Yousaf A, Moon J, Ahmed R, Uppal K, Pemminati S. Recent Advances in the Management of Dyslipidemia: A Systematic Review. Cureus. 2025 Mar;17(3):e81034. doi: 10.7759/cureus.81034. Epub 2025 Mar 23. PMID: 40264627; PMCID: PMC12013775.
We would love to help them too.
For First Time Users
We provide a database of explanations from real doctors on a range of medical topics. Get started by exploring our library of questions and topics you want to learn more about.
Was this page helpful?
Purpose and positioning of servicesUbie Doctor's Note is a service for informational purposes. The provision of information by physicians, medical professionals, etc. is not a medical treatment. If medical treatment is required, please consult your doctor or medical institution. We strive to provide reliable and accurate information, but we do not guarantee the completeness of the content. If you find any errors in the information, please contact us.