Doctors Note Logo

Published on: 2/24/2026

Infection Not Clearing? Why Your Body Needs Clindamycin & Medically Approved Next Steps

Clindamycin is a targeted antibiotic used when first-line treatments fail, such as with resistant bacteria, penicillin allergy, deep tissue infections, or anaerobic infections; you should start to feel better within 48 to 72 hours, complete the full course, and watch for severe diarrhea that could signal C. diff.

If you are not improving, reconnect with your doctor for culture-guided therapy, possible imaging or abscess drainage, and urgent care for red flags; there are several factors to consider, and key details that can shape your next steps are explained below.

answer background

Explanation

Infection Not Clearing? Why Your Body Needs Clindamycin & Medically Approved Next Steps

If you've been dealing with an infection that just won't go away, you're not alone. Some bacterial infections are stubborn. They may not respond to first-line antibiotics, or they may involve bacteria that are resistant to common treatments. In certain cases, your doctor may prescribe clindamycin to target the infection more effectively.

Understanding why clindamycin is used — and what steps to take next — can help you recover safely and avoid complications.


Why Some Infections Don't Clear

Most bacterial infections improve within a few days of starting antibiotics. When they don't, it's usually due to one of the following:

  • Antibiotic resistance (the bacteria no longer respond to common drugs)
  • Incorrect antibiotic choice
  • Incomplete treatment course
  • Poor absorption of the medication
  • Deep-seated infections (like abscesses) that need drainage
  • Mixed bacterial infections involving multiple organisms

When standard treatments fail, your doctor may turn to clindamycin because of its specific strengths against certain bacteria.


What Is Clindamycin?

Clindamycin is a prescription antibiotic used to treat serious bacterial infections. It works by stopping bacteria from making the proteins they need to grow and multiply.

It's commonly prescribed for:

  • Skin and soft tissue infections
  • Dental infections and abscesses
  • Bone and joint infections
  • Certain lung infections
  • Intra-abdominal infections
  • Pelvic infections
  • MRSA (methicillin-resistant Staphylococcus aureus) in some cases

Clindamycin is available in several forms:

  • Oral capsules
  • Topical gels or lotions
  • Vaginal creams
  • Injectable forms (for hospital use)

Your doctor chooses the form based on the location and severity of the infection.


Why Your Body Might Need Clindamycin

Clindamycin is often used when:

1. The Bacteria Are Resistant

Some bacteria don't respond to penicillin or other first-line antibiotics. Clindamycin can be effective against resistant strains, especially certain staph and strep species.

2. You Have a Penicillin Allergy

If you're allergic to penicillin, clindamycin is often used as an alternative.

3. The Infection Is Deep or Severe

Clindamycin penetrates well into tissues, bone, and abscesses. That makes it useful for:

  • Bone infections (osteomyelitis)
  • Dental abscesses
  • Deep skin infections

4. The Infection Involves Anaerobic Bacteria

Some bacteria thrive in low-oxygen environments, such as deep wounds or abdominal infections. Clindamycin is particularly effective against these anaerobic organisms.


What to Expect When Taking Clindamycin

Most people start to feel better within 48–72 hours. However:

  • Always complete the full course, even if symptoms improve.
  • Take it exactly as prescribed.
  • Do not skip doses.
  • Do not save leftovers for future use.

Stopping early can allow bacteria to regrow — sometimes stronger and more resistant.


Possible Side Effects of Clindamycin

Like all antibiotics, clindamycin can cause side effects. Most are mild, but some can be serious.

Common Side Effects

  • Nausea
  • Diarrhea
  • Stomach discomfort
  • Metallic taste

Serious but Less Common Risks

The most important risk associated with clindamycin is a condition called pseudomembranous colitis, often caused by Clostridioides difficile (C. diff).

Clindamycin can disrupt your normal gut bacteria, allowing harmful bacteria to overgrow.

Symptoms may include:

  • Severe diarrhea
  • Abdominal cramping
  • Fever
  • Blood or mucus in stool

If you develop ongoing or severe diarrhea while taking clindamycin — or even weeks after finishing it — contact your doctor immediately and consider using a free AI-powered tool to check your symptoms for Pseudomembranous Colitis to help you understand what might be happening and whether you need urgent care.


Medically Approved Next Steps If Your Infection Isn't Clearing

If you're still not improving while taking clindamycin, here's what to do:

1. Reconnect With Your Doctor

Do not self-adjust the dose. Instead, contact your healthcare provider if:

  • Symptoms worsen after 48–72 hours
  • You develop new symptoms
  • Fever persists
  • The infection spreads
  • Pain increases

Your doctor may:

  • Order a culture to identify the bacteria
  • Adjust the antibiotic
  • Add a second antibiotic
  • Recommend imaging (such as ultrasound or CT scan)
  • Drain an abscess if needed

2. Check for an Abscess

Antibiotics alone cannot always treat abscesses. If there is trapped pus, it may need to be drained. This is common with:

  • Dental infections
  • Skin boils
  • Deep soft tissue infections

If swelling becomes more painful, firm, or enlarges, seek medical evaluation.

3. Watch for Red Flag Symptoms

Seek urgent care or emergency care if you experience:

  • Difficulty breathing
  • Swelling of face or throat
  • Severe allergic reaction
  • Rapidly spreading redness
  • High fever with shaking chills
  • Severe abdominal pain
  • Persistent, watery diarrhea

These symptoms could signal a serious complication.


Supporting Your Body During Antibiotic Treatment

While clindamycin does the medical work of killing bacteria, you can support your recovery by:

  • Staying well hydrated
  • Eating light, balanced meals
  • Getting enough rest
  • Avoiding alcohol (if advised by your doctor)
  • Taking probiotics if approved by your healthcare provider

Always speak with your doctor before starting supplements, especially if you have underlying conditions.


Preventing Future Antibiotic Resistance

Antibiotic resistance is a growing global health issue. You can help reduce risk by:

  • Never requesting antibiotics for viral infections (like colds or flu)
  • Taking antibiotics only when prescribed
  • Completing the full course
  • Not sharing medication
  • Practicing good hygiene

Responsible use protects both you and others.


When Clindamycin Is the Right Choice

Clindamycin is not a "stronger" antibiotic in a general sense — it is a targeted antibiotic. Its strength lies in:

  • Its effectiveness against anaerobic bacteria
  • Its usefulness in penicillin-allergic patients
  • Its ability to penetrate deep tissues

When prescribed appropriately, clindamycin can be highly effective and even life-saving.


The Bottom Line

If your infection isn't clearing, it may be because:

  • The bacteria are resistant
  • The infection is deeper than expected
  • The wrong antibiotic was initially used
  • The treatment course wasn't completed

Clindamycin is often prescribed in these situations because it effectively targets certain stubborn bacteria and penetrates deep into tissues.

However, it must be taken carefully and under medical supervision due to the risk of side effects — especially severe diarrhea linked to pseudomembranous colitis.

If symptoms worsen, persist, or feel severe, do not delay. Speak to a doctor promptly. Some infections can become life-threatening if untreated or improperly treated.

If you are concerned about digestive symptoms while on clindamycin, use the Pseudomembranous Colitis symptom checker above and follow up with a healthcare provider.

Your health is too important to guess. When in doubt, speak to a doctor about anything that could be serious or life-threatening.

With the right diagnosis, the right antibiotic — including clindamycin when appropriate — and proper follow-up, most bacterial infections can be successfully treated.

(References)

  • * Finegold SM. Clindamycin Revisited: A Review of its Role in the Treatment of Anaerobic Infections. Clin Infect Dis. 2018 Sep 14;67(Suppl 2):S105-S110. doi: 10.1093/cid/ciy519. PMID: 30046647.

  • * Lewis K. Mechanisms of bacterial persistence and biofilm formation. Annu Rev Microbiol. 2017 Sep 8;71:405-421. doi: 10.1146/annurev-micro-090816-010355. PMID: 28594954.

  • * Spigaglia P, Facchin D, Gagliardi L, Scaramella R, Cirino P, Nardella M, Pantosti A. Clindamycin resistance in Staphylococcus aureus: mechanisms, prevalence, and therapeutic implications. Future Microbiol. 2018 Mar;13:307-318. doi: 10.2217/fmb-2017-0242. Epub 2018 Jan 10. PMID: 29329712.

  • * Conlon BP. Strategies to overcome bacterial persistence and multidrug resistance. Curr Opin Microbiol. 2020 Oct;57:114-121. doi: 10.1016/j.mib.2020.04.010. Epub 2020 May 4. PMID: 32332130.

  • * Domenech M, García-Rodríguez S, de la Fuente-Núñez C. Antibiofilm Strategies: Current Therapeutic Advances and New Targets. Antibiotics (Basel). 2021 Jun 25;10(7):777. doi: 10.3390/antibiotics10070777. PMID: 34208226; PMCID: PMC8300257.

Thinking about asking ChatGPT?Ask me instead

Tell your friends about us.

We would love to help them too.

smily Shiba-inu looking

For First Time Users

What is Ubie’s Doctor’s Note?

We provide a database of explanations from real doctors on a range of medical topics. Get started by exploring our library of questions and topics you want to learn more about.

Learn more about diseases

Pseudomembranous Colitis

Was this page helpful?

Purpose and positioning of servicesUbie Doctor's Note is a service for informational purposes. The provision of information by physicians, medical professionals, etc. is not a medical treatment. If medical treatment is required, please consult your doctor or medical institution. We strive to provide reliable and accurate information, but we do not guarantee the completeness of the content. If you find any errors in the information, please contact us.