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Published on: 8/18/2026
Hypophosphatasia (HPP) is caused by loss-of-function variants in the ALPL gene, which normally directs the body to make tissue-nonspecific alkaline phosphatase, the enzyme that clears mineralization inhibitors like inorganic pyrophosphate so bones and teeth can harden properly. When that enzyme activity drops, pyrophosphate builds up and blocks calcium and phosphate from binding into bone, producing soft bones, early tooth loss, muscle pain, fractures, and in severe infantile forms, breathing trouble and vitamin B6-responsive seizures. Severity depends on which variants are present and whether one or both copies of the gene are affected, so two people in the same family can look very different, and mild adult cases are frequently mistaken for osteoporosis, fibromyalgia, or arthritis. There are several genetic, lab, and symptom factors that change what testing and treatment make sense, so see below to understand more before drawing conclusions.
Because low alkaline phosphatase and bone pain overlap with many far more common conditions, mapping your specific symptoms first is the fastest way to know whether a genetics or metabolic bone referral is warranted, and a free, instant, online symptom check can help you organize what you are experiencing and what to ask about next.
Last reviewed for medical accuracy: 08/18/2026
Hypophosphatasia (.hpp) is a rare inherited disorder caused by mutations in the ALPL gene, which encodes tissue-nonspecific alkaline phosphatase (TNSALP). When TNSALP activity is low or absent, key minerals and substrates build up, disrupting bone and tooth development. Understanding why rare gene defects lead to .hpp helps patients and families make informed decisions about diagnosis, treatment, and long-term care.
Hypophosphatasia shows a broad spectrum based on age of onset and symptom severity. Recognizing subtypes guides next steps:
Common features of .hpp can overlap with other conditions. Early recognition helps accelerate diagnosis:
If you notice any combination of these signs, consider a free, online symptom check, using the doctor approved Ubie Symptom Checker.
Confirming .hpp requires a stepwise approach:
There is no cure for .hpp, but targeted therapies and supportive care can greatly improve quality of life:
Long-term follow-up is crucial for people with .hpp:
Since .hpp is inherited, families benefit from genetic counseling:
While many aspects of .hpp are chronic, certain signs require prompt evaluation:
Always speak to a doctor about anything that could be life threatening or serious.
Understanding why rare gene defects cause .hpp empowers you to take the right next steps. Early diagnosis, targeted therapy, and ongoing support can transform the outlook for people with .hpp. If you suspect you or a loved one may have symptoms of .hpp, consider a free, online symptom check, using the doctor approved Ubie Symptom Checker. Then, schedule an appointment with your healthcare provider to discuss concerns and build a personalized care plan.
(References)
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* Del Angel G, Reynders J, Negron C, Steinbrecher T, Mornet E. Large-scale in vitro functional testing and novel variant scoring via protein modeling provide insights into alkaline phosphatase activity in hypophosphatasia. Hum Mutat. 2020 Jul;41(7):1250-1262. doi: 10.1002/humu.24010. Epub 2020 Mar 18. PMID: 32160374; PMCID: PMC7317754.
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* Fenn JS, Lorde N, Ward JM, Borovickova I. Hypophosphatasia. J Clin Pathol. 2021 Oct;74(10):635-640. doi: 10.1136/jclinpath-2021-207426. Epub 2021 Apr 30. PMID: 33931563.
* Riancho JA. Diagnostic Approach to Patients with Low Serum Alkaline Phosphatase. Calcif Tissue Int. 2023 Mar;112(3):289-296. doi: 10.1007/s00223-022-01039-y. Epub 2022 Nov 8. PMID: 36348061.
* Reis FS, Lazaretti-Castro M. Hypophosphatasia: from birth to adulthood. Arch Endocrinol Metab. 2023 May 25;67(5):e000626. doi: 10.20945/2359-3997000000626. PMID: 37249457; PMCID: PMC10665056.
* Khan AA, Brandi ML, Rush ET, Ali DS, Al-Alwani H, Almonaei K, Alsarraf F, Bacrot S, Dahir KM, Dandurand K, Deal C, Ferrari SL, Giusti F, Guyatt G, Hatcher E, Ing SW, Javaid MK, Khan S, Kocijan R, Linglart A, M'Hiri I, Marini F, Nunes ME, Rockman-Greenberg C, Roux C, Seefried L, Simmons JH, Starling SR, Ward LM, Yao L, Brignardello-Petersen R, Lewiecki EM. Hypophosphatasia diagnosis: current state of the art and proposed diagnostic criteria for children and adults. Osteoporos Int. 2024 Mar;35(3):431-438. doi: 10.1007/s00198-023-06844-1. Epub 2023 Nov 20. PMID: 37982857; PMCID: PMC10866785.
* Seefried L, Genest F, Hofmann C, Brandi ML, Rush E. Diagnosis and Treatment of Hypophosphatasia. Calcif Tissue Int. 2025 Mar 6;116(1):46. doi: 10.1007/s00223-025-01356-y. Epub 2025 Mar 6. PMID: 40047955; PMCID: PMC11885340.
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