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Published on: 1/20/2026
There are several factors to consider: diarrhea lasting 2 weeks is persistent and is most often due to lingering infection like Giardia or C. difficile or post-infectious changes, but also IBS-D, inflammatory bowel disease, malabsorption such as celiac or lactose intolerance, medication effects, bile acid diarrhea, thyroid disease, and microscopic colitis. See below for how clinicians sort this out with targeted stool and blood tests, which at-home steps may help, and the red flags like fever, blood in stool, weight loss, or dehydration that mean you should seek care promptly.
Experiencing diarrhea for 2 weeks—often called persistent diarrhea—warrants a careful look at underlying causes. Most bouts of acute diarrhea resolve within a few days, but when loose or watery stools last longer than 14 days, they may signal a more complex issue. Below is an overview of the most common medical explanations, how providers approach evaluation, and when to seek further care.
Diarrhea for 2 weeks falls into the “persistent” category. According to Foxx-Orenstein & McFarland (Mayo Clin Proc, 2010), persistent diarrhea often bridges the gap between simple infections and longer-term conditions.
Infectious Causes
• Parasitic infections (e.g., Giardia lamblia)
• Clostridioides difficile (especially after antibiotics)
• Persistent viral infections (rare)
Post-Infectious Diarrhea
• After an acute gastroenteritis attack, gut motility or flora may remain altered for weeks.
Inflammatory Bowel Disease (IBD)
• Crohn’s disease or ulcerative colitis can present with chronic, often bloody diarrhea.
• Usually accompanied by abdominal pain, weight loss, fatigue.
Irritable Bowel Syndrome (IBS-D)
• Recurrent loose stools with abdominal discomfort relieved by defecation.
• Diagnosis of exclusion; no tissue inflammation on testing.
Malabsorption Syndromes
• Celiac disease (gluten sensitivity): look for bloating, weight loss.
• Lactose intolerance or other carbohydrate malabsorption.
Medication-Induced
• Antibiotics, metformin, magnesium-containing antacids, SSRIs, laxatives.
• Often improves on stopping or switching the drug.
Bile Acid Diarrhea
• Excess bile acids in colon due to ileal resection or dysfunction.
• Responds to bile acid sequestrants.
Endocrine Disorders
• Hyperthyroidism: speeds up gut transit.
• Diabetes with autonomic neuropathy.
Microscopic Colitis
• Lymphocytic or collagenous colitis: chronic, non-bloody watery diarrhea.
• Normal colonoscopy; diagnosis via biopsy.
Less Common Causes
• Pancreatic insufficiency, small-intestinal bacterial overgrowth (SIBO)
• Ischemic colitis, neoplasms (rare in 2-week timeframe)
A systematic approach helps identify the underlying cause and rule out emergencies:
History & Physical Exam
• Onset, stool characteristics (blood, mucus, fat)
• Associated symptoms: fever, weight loss, abdominal pain, urgency
• Medication review, recent travel, antibiotic use
Basic Laboratory Tests
• Stool studies: culture, ova & parasites, C. difficile toxin
• Blood counts, electrolytes (look for dehydration, hyponatremia)
• Thyroid function, celiac serologies if indicated
Endoscopy & Imaging
• Colonoscopy with biopsy for IBD or microscopic colitis
• Abdominal ultrasound/CT if obstruction, masses, or organ disease suspected
Special Tests
• Breath tests for SIBO or lactose intolerance
• 72-hour fecal fat collection for steatorrhea
Persistent diarrhea for 2 weeks can lead to:
While you pursue diagnosis, these measures can help:
Hydration & Electrolytes
• Oral rehydration solutions or clear broths
• Avoid excess simple sugars, caffeine, alcohol
Diet Adjustments
• BRAT diet (bananas, rice, applesauce, toast) initially
• Low-fat, low-fiber meals until improvement
• Reintroduce lactose-containing or high-fiber foods slowly
Medications
• Loperamide or bismuth subsalicylate for symptom control (not if infection suspected)
• Bile acid binders if bile-acid diarrhea confirmed
Probiotics
• May restore healthy gut flora, especially after antibiotics
Consider consulting a healthcare provider if you have diarrhea for 2 weeks plus:
You might also try a free, online symptom check to help decide if immediate care is needed.
Diarrhea for 2 weeks is more than just an inconvenience—it can signal persistent infection, chronic disease, or other medical issues. A structured evaluation helps pinpoint the cause and prevent complications such as dehydration and electrolyte imbalances. If your symptoms persist, worsen, or you develop red-flag signs (fever, blood in stool, severe pain), please speak to a doctor promptly. Early diagnosis and treatment can make all the difference.
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