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Published on: 1/29/2026

What causes stomach pain with frequent loose stools?

Common causes include short-term infections, food intolerances, irritable bowel syndrome, medication side effects, and stress-related gut sensitivity; a less common but important cause is inflammatory bowel disease, which involves ongoing inflammation. Duration and red flags like blood in the stool, weight loss, fever, nighttime diarrhea, or worsening pain help guide next steps, so see the complete details below to know when simple self-care may be enough and when to contact a doctor promptly.

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Explanation

Stomach pain with frequent loose stools is a common but often frustrating problem. For some people, it comes and goes. For others, it becomes a regular disruption to daily life. While many causes are mild and manageable, some conditions—such as IBD (Inflammatory Bowel Disease)—require medical care and long-term follow-up. Understanding what may be behind these symptoms is the first step toward getting the right help.

Below is a clear, balanced overview of the most credible causes, written in plain language and without unnecessary alarm.


What's Happening in the Gut?

Stomach pain combined with loose stools usually means the digestive system is irritated, inflamed, or not working as smoothly as it should. This can happen when:

  • The intestines move food too quickly
  • The gut lining becomes inflamed or damaged
  • Digestion or absorption is impaired
  • The balance of gut bacteria is disrupted

The exact cause matters, because treatment depends on what's driving the symptoms.


Common Causes of Stomach Pain and Frequent Loose Stools

1. Infections (Short-Term and Usually Self-Limited)

Viral, bacterial, or parasitic infections can irritate the intestines and cause:

  • Crampy stomach pain
  • Loose or watery stools
  • Urgency to use the bathroom
  • Sometimes fever or nausea

Most infections improve within a few days. However, ongoing symptoms beyond one to two weeks should be checked by a doctor, especially if there is dehydration or blood in the stool.


2. Food-Related Triggers and Intolerances

Some people have difficulty digesting certain foods, which can lead to pain and diarrhea-like stools.

Common examples include:

  • Lactose intolerance
  • Sensitivity to high-fat foods
  • Reactions to artificial sweeteners
  • Gluten sensitivity (with or without celiac disease)

Symptoms often improve when the trigger food is avoided, but ongoing problems deserve proper testing rather than guesswork.


3. Irritable Bowel Syndrome (IBS)

IBS is a functional gut disorder, meaning the bowel looks normal but doesn't work normally. It is one of the most common causes of:

  • Recurrent stomach pain
  • Frequent loose stools, constipation, or both
  • Symptoms linked to stress or certain foods
  • Relief after a bowel movement

IBS does not cause inflammation or permanent damage, but it can significantly affect quality of life.

If your symptoms match this pattern, a free online assessment for Irritable Bowel Syndrome (IBS) can help you explore whether this condition might explain what you're experiencing and guide your next steps.


4. Inflammatory Bowel Disease (IBD)

IBD is a more serious condition that includes Crohn's disease and ulcerative colitis. Unlike IBS, IBD involves ongoing inflammation of the digestive tract that can cause real tissue damage.

Symptoms may include:

  • Persistent stomach pain
  • Frequent loose stools or chronic diarrhea
  • Blood or mucus in the stool
  • Fatigue and weight loss
  • Symptoms that worsen over time rather than improve

IBD is less common than IBS, but it is a key condition doctors consider when symptoms are ongoing, severe, or progressive.

Early diagnosis of IBD matters. Untreated inflammation can lead to complications, but modern treatments are effective at controlling symptoms and protecting long-term gut health.


5. Medication Side Effects

Some medications can irritate the stomach or intestines, leading to pain and loose stools. Common examples include:

  • Antibiotics (which alter gut bacteria)
  • Certain pain relievers
  • Magnesium-containing supplements
  • Some diabetes or heart medications

If symptoms start after a new medication, a doctor can help determine whether an alternative is appropriate.


6. Stress and the Gut-Brain Connection

The digestive system is closely connected to the nervous system. Stress, anxiety, and emotional strain can worsen gut symptoms by:

  • Increasing intestinal sensitivity
  • Speeding up bowel movements
  • Triggering pain without visible inflammation

This does not mean symptoms are "all in your head." The pain is real, but the cause may be related to how the gut and brain communicate.


How Doctors Tell IBS and IBD Apart

Because IBS and IBD can cause similar symptoms, doctors rely on key differences:

IBS

  • No intestinal inflammation
  • Symptoms often fluctuate
  • No bleeding or weight loss
  • Normal test results

IBD

  • Ongoing inflammation
  • Symptoms may worsen over time
  • Possible bleeding, anemia, or weight loss
  • Abnormal blood tests, stool tests, or imaging

If IBD is suspected, tests such as blood work, stool studies, imaging, or a colonoscopy may be recommended.


When Loose Stools and Pain Are More Concerning

Most digestive symptoms are not dangerous, but some signs should prompt urgent medical advice:

  • Blood in the stool
  • Black or tarry stools
  • Persistent vomiting
  • Fever lasting more than a few days
  • Unexplained weight loss
  • Nighttime diarrhea that wakes you up
  • Severe or worsening abdominal pain

These can point to conditions such as IBD, significant infection, or other serious digestive diseases.


Managing Symptoms While Seeking Answers

While medical evaluation is important, some general steps may help reduce discomfort:

  • Stay well hydrated, especially with frequent loose stools
  • Eat simple, easy-to-digest foods during flare-ups
  • Avoid foods that clearly worsen symptoms
  • Keep a symptom and food diary
  • Manage stress through sleep, movement, or relaxation techniques

These steps support gut health but do not replace proper diagnosis.


Why Talking to a Doctor Matters

If stomach pain and frequent loose stools last more than a couple of weeks, keep returning, or interfere with daily life, it's time to speak to a doctor. This is especially important to rule out conditions like IBD, which require ongoing care and monitoring.

A doctor can:

  • Identify whether inflammation is present
  • Distinguish IBS from IBD and other conditions
  • Recommend safe, evidence-based treatments
  • Help prevent long-term complications

The Bottom Line

Stomach pain with frequent loose stools has many possible causes—from temporary infections and food sensitivities to chronic conditions like IBS and IBD. While many cases are manageable, persistent or worsening symptoms should never be ignored.

Listening to your body, using trusted tools like a symptom checker, and speaking openly with a doctor can lead to clarity, relief, and better long-term digestive health.

(References)

  • * Lacy BE, Mearin F, Chang L, et al. Bowel Disorders. Gastroenterology. 2016;150(6):1393-1407.e5. doi:10.1053/j.gastro.2016.02.031.

  • * Ungaro R, Mehandru S, Colombel JF. Inflammatory bowel disease: recent insights into pathogenesis and therapy. Nat Rev Gastroenterol Hepatol. 2017;14(12):731-746. doi:10.1038/nrgastro.2017.151.

  • * Lebwohl B, Ludvigsson JF, Green PHR. Celiac disease and other gluten-related disorders. N Engl J Med. 2015;373(13):1235-1246. doi:10.1056/NEJMra1408827.

  • * Kambhampati SB, Zogg H, Minar P, et al. Infectious Gastroenteritis. In: StatPearls. Treasure Island (FL): StatPearls Publishing; 2023 Jan-.

  • * Pardi DS, Kelly CP, Feuerstein JD, et al. Microscopic colitis: ACG Clinical Guideline. Am J Gastroenterol. 2021;116(9):1754-1772. doi:10.14309/ajg.0000000000001472.

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